pyDock: structural prediction of protein-protein interactions


pyDock is a protein-protein docking algorithm (Cheng et al. 2007 Proteins 68, 503-515) that uses electrostatics, desolvation energy and a limited van der Waals contribution to score rigid-body docking poses (pyDockSER).

pyDock participates in CAPRI (Critical Assessment of PRediction of Interactions). You can evaluate its performance among the rest of participants visiting the summary provided by Yang Shen from Vadja Team. pyDock is participating in CAPRI under the name of "Fernandez-Recio".