Tools and Databases

  • CCharPPI

    CCharPPI

    Computational Characterisation of Protein-Protein Interactions.

    http://life.bsc.es/pid/ccharppi/

  • OPRA Server

    OPRA Server

    OPRA (Optimal Protein-RNA Area) is useful for identifying potential RNA-binding sites on proteins and can help to model protein-RNA interactions of biological and therapeutic interest.

    http://life.bsc.es/pid/opra

  • Protein-RNA Benchmark

    Protein-RNA Benchmark

    The Protein-RNA benchmark v1.0 is composed of 106 cases, with 5 unbound-unbound, 4 unbound-pseudo-unbound, 62 unbound-bound, 5 unbound-model, 8 model-unbound, 19 model-bound cases and 3 model-model.

    http://life.bsc.es/pid/protein-rna-benchmark/

  • pyDock

    pyDock

    pyDock is a fast protocol which uses electrostatics and desolvation energy to score docking poses generated with FFT-based algorithms.

    http://life.bsc.es/pid/pydock

  • pyDockEneRes

    pyDockEneRes

    pyDock Energy per Residue

    http://life.bsc.es/pid/pydockeneres

  • pyDockRescoring

    pyDockRescoring

    PyDockRescoring is a web server for rescoring of pyDockWEB server jobs.

    http://life.bsc.es/pid/pydockrescoring/

  • pyDockSAXS

    pyDockSAXS

    pyDockSAXS server is a web server for rigid-body protein-protein docking that combines computational and experimental information.

    http://life.bsc.es/pid/pydocksaxs

  • pyDockWEB

    pyDockWEB

    pyDockWEB is a web server for the structural prediction of protein-protein interactions.

    http://life.bsc.es/pid/pydockweb

  • SKEMPI2

    SKEMPI2

    The new version of the SKEMPI database, with more than 7000 mutation data. The SKEMPI database contains data on the changes in thermodynamic parameters and kinetic rate constants upon mutation, for protein-protein interactions for which a structure of the complex has been solved and is available in the protein databank.

    https://life.bsc.es/pid/skempi2/

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