pyDockWEB - Structural prediction of protein-protein interactions

Rigid-body docking and scoring by pyDock

pyDockWEB is a web server for the structural prediction of protein-protein interactions.

Given the 3D coordinates of two interacting proteins, pyDockWEB returns the best rigid-body docking orientations generated by FTDock and evaluated by pyDock scoring function, which includes electrostatics, desolvation energy and limited van der Waals contribution.

Please cite this reference if you use pyDockWEB in your research:

Jimenez-Garcia B., Pons C. and Fernandez-Recio J.
"pyDockWEB: a web server for rigid-body protein-protein docking using electrostatics and desolvation scoring".
Bioinformatics (2013) 29(13):1698-1699.

A 32-bit Linux version of pyDock is available for download here.

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Rigid-body docking and scoring by pyDock

Job

Please use the new server PyDockDNA to perform protein-DNA docking.